Publications FY2015

Publications FY2015

1) International collaborative papers (peer reviewed)

1.1) International collaborative papers co-authored with overseas affiliated universities 4

       i) Papers where “GI-CoRE” is stated as an affiliated institution

      ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Chua BY, Wong CY, Mifsud EJ, Edenborough KM, Sekiya T, Tan AC, Mercuri F, Rockman S, Chen W, Turner SJ, Doherty PC, Kelso A, Brown LEJackson DC: “Inactivated influenza vaccine that provides rapid, innate-immune-system-mediated protection and subsequent long-term adaptive immunity”, MBio,6(6). Pii,e01024-15 (2015) i)
  2. Gornik SG, Febrimarsa, Cassin AM, MacRae JI, Ramaprasad A, Rchiad Z, McConville MJ, Bacic A, McFadden GI, Pain A, Waller RF : “Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate”, Proc Natl Acad Sci U S A, 112(18),5767-72(2015) i)
  3. Assefa S, Lim C, Preston MD, Duffy CW, Nair MB, Adroub SA, Kadir KA, Goldberg JM, Neafsey DE, Divis P, Clark TG, Duraisingh MT, Conway DJ,Pain A, Singh B: “Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi”, Proc Natl Acad Sci U S A, 112(42),13027-32(2015) i)
  4. Abdallah AM, Hill-Cawthorne GA, Otto TD, Coll F, Guerra-Assunção JA, Gao G, Naeem R, Ansari H, Malas TB, Adroub SA, Verboom T, Ummels R, Zhang H, Panigrahi AK, McNerney R, Brosch R, Clark TG, Behr MA, Bitter W, Pain A: “Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations.”.Sci Rep, 5:15443. doi: 10.1038/srep15443(2015) i)

 

1.2) International collaborative papers 20

          i) Papers where “GI-CoRE” is stated as an affiliated institution

         ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Hiono T, Okamatsu M, Igarashi M, McBride R, de Vries RP, Peng W, Paulson JC, Sakoda Y, Kida H:“Amino acid residues at positions 222 and 227 of the hemagglutinin together with the neuraminidase determine binding of H5 avian influenza viruses to sialyl Lewis X”, Arch Virol, 161, 307-16, (2016) i)
  2. Furuyama W, Marzi A, Nanbo A, Haddock E, Maruyama J, Miyamoto H, Igarashi M, Yoshida R, Noyori O, Feldmann H, Takada A: “Discovery of an antibody for pan-ebolavirus therapy”, Sci Rep, 6 ,20514 (2016) i)
  3. Maruyama J, Nao N, Miyamoto H, Maeda K, Ogawa H, Yoshida R, Igarashi M,Takada A: “Characterization of the glycoproteins of bat-derived influenza viruses”, Virology, 488, 43-50 (2016) i)
  4. Khin Saw Aye, Nakajima C, Yamaguchi T, Min Min Win, Mu Mu Shwe, Aye Aye Win, Thandar Lwin, Wint Wint Nyunt, Ti Ti, Suzuki Y : “Genotypic characterization of multi-drug-resistant Mycobacterium tuberculosis isolates in Myanmar.”, J Infect Chemother, 22(3),174-9 (2016) i) ii)
  5. Diab HM, Nakajima C, Kotb SA, Mokhtar A, Khder NFM, Abdelaal ASA, Hegazy A, Poudel A, Shah Y, Suzuki Y : “First insight into the genetic population structure of Mycobacterium tuberculosis isolated from pulmonary tuberculosis patients in Egypt.”, Tuberculosis, 96,13-20 (2016) i) ii)
  6. Thapa J, Paudel S, Sadaula A, Shah Y, Maharjan B, Kaufman GE, McCauley D, Gairhe KP, Tsubota T, Suzuki Y, Nakajima C: “Mycobacterium orygis–associated tuberculosis in free-ranging rhinoceros, Nepal”, Emerg Infect Dis, 22(3): 570–2 (2016) i)
  7. Villanueva MA, Mingala CN, Gloriani NG, Yanagihara Y, Isoda N, Nakajima C, Suzuki Y, Koizumi N: “Serological investigation of Leptospira infection and its circulation in one intensive-type water buffalo farm in the Philippines”, Jpn J Vet Res, 64(1), 15-24 (2016) i)
  8. Qiu Y, Nakao R, Thu MJ, Akter S, Alam MZ, Kato S, Katakura K,Sugimoto C: “Molecular evidence of spotted fever group Rickettsiae and Anaplasmataceae from ticks and stray dogs in Bangladesh”, Parasitol Res, 115(3), 949-55 (2016) i)
  9. Tamura T, Ruggli N, Nagashima N, Okamatsu M, Igarashi M, Mine J, Hofmann MA, Liniger M, Summerfield A, Kida HSakoda Y: “Intracellular membrane association of the N-terminal domain of classical swine fever virus NS4B determines viral genome replication and virulence”, J Gen Virol, 96(9), 2623-35 (2015) i)
  10. Hiono T, Ohkawara A, Ogasawara K, Okamatsu M, Tamura T, Chu DH, Suzuki M, Kuribayashi S, Shichinohe S, Takada A, Ogawa H, Yoshida R, Miyamoto H, Nao N, Furuyama W, Maruyama J, Eguchi N, Ulziibat G, Enkhbold B, Shatar M, Jargalsaikhan T, Byambadorj S, Damdinjav B, Sakoda YKida H: “ Genetic and antigenic characterization of H5 and H7 influenza viruses isolated from migratory water birds in Hokkaido, Japan and Mongolia from 2010 to 2014”, Virus Genes, 51(1), 57-68 (2015) i)
  11. Mine J, Tamura T, Mitsuhashi K, Okamatsu M, Parchariyanon S, Pinyochon W, Ruggli N, Tratschin JD, Kida HSakoda Y: “The N-terminal domain of Npro of classical swine fever virus determines its stability and regulates type I IFN production”, J Gen Virol, 96(Pt 7), 1746-56 (2015) i)
  12. Nao N, Kajihara M, Manzoor R, Maruyama J, Yoshida R, Muramatsu M, Miyamoto H, Igarashi M, Eguchi N, Sato M, Kondoh T, Okamatsu M, Sakoda YKida HTakada A: “A single amino acid in the M1 protein responsible for the different pathogenic potentials of H5N1 highly pathogenic avian influenza virus strains”, PLoS One, 10(9), e0137989 (2015) i)
  13. Ogawa H, Koizumi N, Ohnuma A, Mutemwa A, Hang’ombe BM, Mweene AS, Takada A, Sugimoto CSuzuki YKida HSawa H: “Molecular epidemiology of pathogenic Leptospira spp. in the straw-colored fruit bat (Eidolon helvum) migrating to Zambia from the Democratic Republic of Congo”, Infect Genet Evol, 32, 143-7 (2015) i) ii)
  14. Ogawa H, Miyamoto H, Nakayama E, Yoshida R, Nakamura I, Sawa H, Ishii A, Thomas Y, Nakagawa E, Matsuno K, Kajihara M, Maruyama J, Nao N, Muramatsu M, Kuroda M, Simulundu E, Changula K, Hang’ombe B, Namangala B, Nambota A, Katampi J, Igarashi MIto K, Feldmann H, Sugimoto C, Moonga L, Mweene A, Takada A: “Seroepidemiological prevalence of multiple species of filoviruses in fruit bats (Eidolon helvum) migrating in Africa”, J Infect Dis, 212 Suppl 2, S101-8 (2015) i) ii)
  15. Kuroda M, Fujikura D, Nanbo A, Marzi A, Noyori O, Kajihara M, Maruyama J, Matsuno K, Miyamoto H, Yoshida R, Feldmann H, Takada A: “Interaction between TIM-1 and NPC1 is important for cellular entry of ebola virus”, J Virol, 89(12), 6481-93 (2015) i)
  16. Sasaki M, Orba Y, Anindita PD, Ishii A, Ueno K, Hang’ombe BM, Mweene AS, Ito K, Sawa H: “Distinct lineages of bufavirus in wild shrews and nonhuman primates.”, Emerg Infect Dis, ;21(7),1230-3(2015) ii)
  17. Anindita PD, Sasaki M, Setiyono A, Handharyani E, Orba Y, Kobayashi S, Rahmadani I, Taha S, Adiani S, Subangkit M, Nakamura I, Sawa H, Kimura T: “Detection of coronavirus genomes in Moluccan naked-backed fruit bats in Indonesia”, Arch Virol,160(4), 1113-8 (2015) i) ii)
  18. Kongsoi S, Yokoyama K, Suprasert A, Utrarachkij F, Nakajima C, Suthienkul O, Suzuki Y: “Characterization of Salmonella Typhimurium DNA gyrase as a target of quinolones”, Drug Test Anal, 7(8), 714-20 (2015) i)
  19. Changkwanyeun R, Usui M, Kongsoi S, Yokoyama K, Kim H, Suthienkul O, Changkaew K, Nakajima C, Tamura Y, Suzuki Y: “Characterization of Campylobacter jejuni DNA gyrase as the target of quinolones”, J Infect Chemother, 21(8), 604-9 (2015) i)
  20. Changkaew K, Intarapuk A, Utrarachkij F, Nakajima C, Suthienkul O, Suzuki Y : “Antimicrobial resistance, extended-spectrum β-lactamase productivity, and class 1 integrons in Escherichia coli from healthy swine”, J Food Prot, 78(8), 1442-50 (2015) i) ii)

 

2) Other original papers 11

          i) Papers where “GI-CoRE” is stated as an affiliated institution

         ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Oshiumi H,Mifsud EJ, Daito T: “Links between recognition and degradation of cytoplasmic viral RNA in innate immune response”, Rev Med Virol, 26(2), 90-101(2016) i) ii)
  2. Hakimi H, Yamagishi J, Kegawa Y, Kaneko O, Kawazu S, Asada M: “Establishment of transient and stable transfection systems for Babesia ovata”, Parasit Vectors, 9, 171 (2016) i)
  3. Gamoh K, Nakamizo M, Okamatsu M, Sakoda Y,Kida H, Suzuki S: “ Protective efficacy of stockpiled vaccine against H5N8 highly pathogenic avian influenza virus isolated from a chicken in Kumamoto prefecture, Japan, in 2014”, J Vet Med Sci, 1;78(1), 139-42 (2016) i)
  4. Kobayashi S, Suzuki T, Kawaguchi A, Phongphaew W, Yoshii K, Iwano T, Harada A, Kariwa H, Orba Y, Sawa H: “Rab8b regulates transport of West Nile virus particles from recycling endosomes.”, J Biol Chem, 291(12), 6559-68 (2016) i)
  5. Abe Y, Tamura T, Torii S, Wakamori S, Nagai M, Mitsuhashi K, Mine J, Fujimoto Y, Nagashima N, Yoshino F, Sugita Y, Nomura T, Okamatsu M, Kida HSakoda Y: “Genetic and antigenic characterization of bovine viral diarrhea viruses isolated from cattle in Hokkaido, Japan”, J Vet Med Sci, 78(1), 61–70 (2016) i) ii)
  6. Itoh Y, Shichinohe S, Nakayama M, Igarashi M, Ishii A, Ishigaki H, Ishida H, Kitagawa N, Sasamura T, Shiohara M, Doi M, Tsuchiya H, Nakamura S, Okamatsu M, Sakoda YKida H, Ogasawara K: “Emergence of H7N9 influenza A virus resistant to neuraminidase inhibitors in nonhuman primates”, Antimicrob Agents Chemother, 59(8),4962-73 (2015) i) ii)
  7. Kozasa T, Abe Y, Mitsuhashi K, Tamura T, Aoki H, Ishimaru M, Nakamura S, Okamatsu M, Kida HSakoda Y : “Analysis of a pair of END+ and END- viruses derived from the same bovine viral diarrhea virus stock reveals the amino acid determinants in Npro responsible for inhibition of type I interferon production”, J Vet Med Sci, 77(5), 511-8 (2015) i)
  8. Kawahara R, Seto K, Taguchi M, Nakajima C, Kumeda Y, Suzuki Y: “Characterization of third-generation-cephalosporin-resistant shiga toxin-producing strains of Escherichia coli O157:H7 in Japan”, J Clin Microbiol, 53(9), 3035-8 (2015) i) ii)
  9. Usami O,Nakajima C, Endo S, Inomata S, Kanamori H, Hirakata Y, Uchiyama B, Kaku M, Suzuki Y, Hattori T: “A case of Manila type Mycobacterium tuberculosis infection in Japan”, Clin Case Rep, 3(7), 622-5 (2015) i) ii)
  10. Ozawa M, Matsuu A, Yonezawa K, Igarashi M, Okuya K, Kawabata T,Ito K, Tsukiyama-Kohara K, Taneno A, Deguchi E: “Efficient isolation of swine influenza viruses by age-targeted specimen collection”, J Clin Microbiol, 53(4):1331-8 (2015) i)
  11. Sato Y, Yamagishi J, Yamashita R, Shinozaki N, Ye B, Yamada T, Yamamoto M, Nagasaki M, Tsuboi A: “Inter-individual differences in the oral bacteriome are greater than intra-day fluctuations in individuals”, PLoS One, 10(6), e0131607 (2015) i)