Publications FY2016

Publications FY2016

1) International collaborative papers (peer reviewed)

1.1) International collaborative papers co-authored with overseas affiliated universities:8 

          i) Papers where “GI-CoRE” is stated as an affiliated institution

         ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Lv Q, Zhang H, Tian L, Zhang R, Zhang Z, Li J, Tong Y, Fan H, Carr MJ, Shi W: “Novel sub-lineages, recombinants and reassortants of severe fever with thrombocytopenia syndrome virus”, Ticks Tick Borne Dis, 8(3), 385-390 (2017) i)
  2. Carr M, Kawaguchi A, Sasaki M, Gonzalez G,Ito K, Thomas Y, Hang’ombe BM, Mweene AS, Zhao G, Wang D, Orba Y, Ishii A, Sawa H : “Isolation of a simian immunodeficiency virus from a malbrouck (Chlorocebus cynosuros)”, Arch Virol, 162(2), 543-548 (2017) i)
  3. Phongphaew W, Kobayashi S, Sasaki M, Carr M, Hall WW, Orba Y, Sawa H: “Valosin-containing protein (VCP/p97) plays a role in the replication of West Nile virus”, Virus Res, 228, 114-123(2017) i)
  4. Anindita PD, Sasaki M, Nobori H, Sato A, Carr M, Ito N, Sugiyama M, Orba Y, Sawa H: “Generation of recombinant rabies viruses encoding NanoLuc luciferase for antiviral activity assays.”, Virus Res, 215,121-8(2016) i)
  5. Shi W, Zhang Z, Ling C, Carr MJ, Tong Y, Gao GF: “ Increasing genetic diversity of Zika virus in the Latin American outbreak”, Emerg Microbes Infect, 5, e68 (2016) i)
  6. Ansar HR, Templeton TJ, Subudhi AK, Ramaprasad A, Tang J Lu F, Naeem R, Hashish Y, Oguikee MC, Benaventef ED, Clark TG, Sutherland CJ, Bardwell JW, Culleton R, Cao J, Pain A: “Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.” J. of Parasitology, doi:10.1016 /j.ijpara (2016) i)
  7. Rao PN, Santos JM, Pain A, Templeton TJ, Mair GR: “Translational repression of the cpw-wpc gene family in the malaria parasite Plasmodium.” Parasitol Int,14;65(5 Pt A):463-471 (2016) i)
  8. Moon RW, Sharaf H, Hastings CH, Ho YS, Nair MB, Rchiad Z, Knuepfer E, Ramaprasad A, Mohring F, Amir A, Yusuf NA, Hall J, Almond N, Lau YL, Pain A, Blackman MJ, Holder AA: “ Normocyte-binding protein required for human erythrocyte invasion by the zoonotic malaria parasite Plasmodium knowlesi.”, Proc Natl Acad Sci U S A, 113(26):7231-6 (2016) i)

 

1.2) International collaborative papers:25

          i) Papers where “GI-CoRE” is stated as an affiliated institution

          ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Nakayama M, Itoh Y, Shichinohe S, Nakabayashi R, Ishigaki H, Sakoda Y, Le QM, Kawaoka Y, Kida H, Ogasawara K: “Potential risk of repeated nasal vaccination that induces allergic reaction with mucosal IgE and airway eosinophilic infiltration in cynomolgus macaques infected with H5N1 highly pathogenic avian influenza virus”, Vaccine, 35(7), 1008-1017(2017) i) ii)
  2. Nao N, Yamagishi J, Miyamoto H, Igarashi M, Manzoor R, Ohnuma A, Tsuda Y, Furuyama W, Shigeno A, Kajihara M, Kishida N, Yoshida R, Takada A: “Genetic Predisposition To Acquire a Polybasic Cleavage Site for Highly Pathogenic Avian Influenza Virus Hemagglutinin”, MBio, 8(1). pii, e02298-16 (2017) i)
  3. Nakao R,Matsuno K, Qiu Y, Maruyama J, Eguchi N, Nao N, Kajihara M, Yoshii K, SawaHTakada ASugimoto C: “Putative RNA viral sequences detected in an Ixodes scapularis-derived cell line”, Ticks Tick Borne Dis, 8(1), 103-111(2017) i)
  4. Gonzalez G, Sasaki M, Burkitt-Gray L, Kamiya T, Tsuji NM, Sawa H,Ito K: “An optimistic protein assembly from sequence reads salvaged an uncharacterized segment of mouse picobirnavirus”, Sci Rep, 7, 40447(2017) i)
  5. Tun T, Aye KS, Nyunt WW, Crump JA, Nakajima C, Suzuki Y, Thinn KK, Cook GM, Aung HL: “Genotypic diversity of Mycobacterium tuberculosis strains in Myanmar”, Infect Dis (Lond), 49(3), 237-239 (2017) i)
  6. Matsuno K, Orba Y, Maede-White K, Scott D, Feldmann F, Liang M, Ebihara H: “Animal Models of Emerging Tick-Borne Phleboviruses: Determining Target Cells in a Lethal Model of SFTSV Infection”, Front Microbiol, 8, 104 (2017) i)
  7. Hayashida K, Kajino K, Simukoko H, Simuunza M, Ndebe J, Chota A, Namangala B, Sugimoto C: “Direct detection of falciparum and non-falciparum malaria DNA from a drop of blood with high sensitivity by the dried-LAMP system”, Parasit Vectors, 10(1), 26 (2017) i)
  8. Chu DH, Okamatsu M, Matsuno K, Hiono T, Ogasawara K, Nguyen LT, Van Nguyen L, Nguyen TN, Nguyen TT, Van Pham D, Nguyen DH, Nguyen TD, To TL, Van Nguyen H, Kida H, Sakoda Y: “ Genetic and antigenic characterization of H5, H6 and H9 avian influenza viruses circulating in live bird markets with intervention in the center part of Vietnam”, Vet Microbiol,192,194-203(2016) i)
  9. Yamada T, Horimoto H, Kameyama T, Hayakawa S, Yamato H, Dazai M,Takada A, Kida H, Bott D, Zhou AC, Hutin D, Watts TH, Asaka M, Matthews J, Takaoka A: “Constitutive aryl hydrocarbon receptor signaling constrains type I interferon-mediated antiviral innate defense”, Nat Immunol, 17(6), 687-94 (2016) i)
  10. Simulundu E, Mweene AS, Changula K, Monze M, Chizema E, Mwaba P, Takada A, Ippolito G, Kasolo F, Zumla A, Bates M: “Lujo viral hemorrhagic fever: considering diagnostic capacity and preparedness in the wake of recent Ebola and Zika virus outbreaks”, Rev Med Virol, 26(6), 446-454(2016) i)
  11. Yoshida R, Muramatsu S, Akita H, Saito Y, Kuwahara M, Kato D, Changula K, Miyamoto H, Kajihara M, Manzoor R, Furuyama W, Marzi A, Feldmann H, Mweene A, Masumu J, Kapeteshi J, Muyembe-Tamfum JJ, Takada A: “Development of an Immunochromatography Assay (QuickNavi-Ebola) to Detect Multiple Species of Ebolaviruses”, J Infect Dis, 214(suppl3), S185-S191(2016) i)
  12. Furuyama W, Marzi A, Carmody AB, Maruyama J, Kuroda M, Miyamoto H, Nanbo A, Manzoor R, Yoshida R, Igarashi M, Feldmann H, Takada A: “Fcγ-receptor IIa-mediated Src Signaling Pathway Is Essential for the Antibody-Dependent Enhancement of Ebola Virus Infection”, PLoS Pathog, 12(12), e1006139 (2016) i)
  13. Kouwaki T, Fukushima Y, Daito T, Sanada T, Yamamoto N, Mifsud EJ, Leong CR, Tsukiyama-Kohara K, Kohara M, Matsumoto M, Seya T, Oshiumi H: “Extracellular Vesicles Including Exosomes Regulate Innate Immune Responses to Hepatitis B Virus Infection”, Front Immunol,7, 335(2016) ) i) ii)
  14. Sasaki M, Orba Y, Sasaki S, Gonzalez G, Ishii A, Hang’ombe BM, Mweene AS,Ito KSawa H: “Multi-reassortant G3P[3] group A rotavirus in a horseshoe bat in Zambia”, J Gen Virol, 97(10), 2488-2493 (2016) i) ii)
  15. Sasaki M, Gonzalez G, Wada Y, Setiyono A, Handharyani E, Rahmadani I, Taha S, Adiani S, Latief M, Kholilullah ZA, Subangkit M, Kobayashi S, Nakamura I, Kimura T, Orba Y, Ito K, Sawa H: “Divergent bufavirus harboured in megabats represents a new lineage of parvoviruses”, Sci Rep, 6, 24257(2016) i)
  16. Villanueva MA, Mingala CN, Balbin MM, Nakajima C, Isoda N, Suzuki Y*, Koizumi N: “Molecular epidemiology of pathogenic Leptospira spp. among large ruminants in the Philippines.” J Vet Med Sci, 78(11):1649-55 (2016) i)
  17. Chagan-Yasutan H, Chen Y, Lacuesta TL, Leano PS, Iwasaki H, Hanan F, Taurustiati D, Ohmoto Y, Ashino Y, Saitoh H, Kiyomoto H, Suzuki Y, Telan FO, Hattori T: “Urine Levels of Defensin α1 Reflect Kidney Injury in Leptospirosis Patients”, Int J Mol Sci, 17(10), 1637(2016) i) ii)
  18. Chishimba K, Hang’ombe BM, Muzandu K, Mshana SE, Matee MI, Nakajima C, Suzuki Y: “Detection of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli in Market-Ready Chickens in Zambia”, Int J Microbiol, 2016, 5275724 (2016) i) ii)
  19. Utrarachkij F, Nakajima C, Siripanichgon K, Changkaew K, Thongpanich Y, Pornraungwong S, Suthienkul O, Suzuki Y: “Genetic diversity and antimicrobial resistance pattern of Salmonella enterica serovar enteritidis clinical isolates in Thailand”, J Infect Chemother,22,209-15 (2016) i) ii)
  20. Changkwanyeun R, Yamaguchi T, Kongsoi S, Changkaew K, Yokoyama K, Kim H, Suthienkul O, Usui M, Tamura Y, Nakajima C, Suzuki Y: “ Impact of mutations in DNA gyrase genes on quinolone resistance in Campylobacter jejuni”, Drug Test Anal, 8(10), 1071-1076 (2016) i)
  21. Paudel S, Villanueva MA, Mikota SK, Nakajima C, Gairhe KP, Subedi S, Rayamajhi N, Sashika M, Shimozuru M, Matsuba T, Suzuki Y, Tsubota T: “Development and evaluation of an interferon-γ release assay (IGRA) in Asian elephants (Elephas maximus)”, J Vet Med Sci, 78(7), 1171-21 (2016) i)
  22. Kongsoi S, Changkwanyeun R, Yokoyama K,Nakajima C, Changkaew K, Suthienkul O, Suzuki Y: “Amino acid substitutions in GyrA affect quinolone susceptibility in Salmonella typhimurium, Drug Test Anal, 8(10), 1065-1070 (2016) i) ii)
  23. Nakao R, Jongejan F,Sugimoto C : “Draft Genome Sequences of Three Strains of Ehrlichia ruminantium, a Tick-Borne Pathogen of Ruminants, Isolated from Zimbabwe, The Gambia, and Ghana”, Genome Announc, 4(3), e00453-16 (2016) i)
  24. Nakao R, Abe T, Funayama S, Sugimoto C : “Horizontally Transferred Genetic Elements in the Tsetse Fly Genome: An Alignment-Free Clustering Approach Using Batch Learning Self-Organising Map (BLSOM)”, Biomed Res Int, 2016, 3164624(2016) i)
  25. Suganuma K, Sarwono AE, Mitsuhashi S, Jąkalski M, Okada T, Nthatisi M, Yamagishi J, Ubukata M, Inoue N: “Mycophenolic Acid and Its Derivatives as Potential Chemotherapeutic Agents Targeting Inosine Monophosphate Dehydrogenase in Trypanosoma congolense”, Antimicrob Agents Chemother, 60(7), 4391-3(2016) i)

 

2) Other original papers:14 

          i) Papers where “GI-CoRE” is stated as an affiliated institution

         ii) Papers which mention “Hokkaido University” in the acknowledgements.

  1. Zhao J, Shiratori B, Okumura M, Yanai H, Matsumoto M, Nakajima C, Mizuno K, Ono K, Oda T, Chagan-Yasutan H, Ashino Y, Matsuba T, Yoshiyama T, Suzuki Y, Hattori T: “Difference in Antibody Responses to Mycobacterium tuberculosisAntigens in Japanese Tuberculosis Patients Infected with the Beijing/Non-Beijing Genotype”, J Immunol Res, 2017, 4797856 (2017) i) ii)
  2. Nakayama M, Ozaki H, Itoh Y, Soda K, Ishigaki H, Okamatsu M, Sakoda Y, Park CH, Tsuchiya H, Kida H, Ogasawara K : “Vaccination against H9N2 avian influenza virus reduces bronchus-associated lymphoid tissue formation in cynomolgus macaques after intranasal virus challenge infection”, Pathol Int, 66(12), 678-686 (2016) i) ii)
  3. Okamatsu M, Hiono T, Kida H, Sakoda Y: “Recent developments in the diagnosis of avian influenza”, Vet J, 215, 82-6 (2016) i)
  4. Okamatsu M, Motohashi Y, Hiono T, Tamura T, Nagaya K, Matsuno K, Sakoda Y, Kida H: “Is the optimal pH for membrane fusion in host cells by avian influenza viruses related to host range and pathogenicity?”, Arch Virol, 161(8), 2235-42 (2016) i)
  5. Shichinohe S, Itoh Y, Nakayama M, Ozaki H, Soda K, Ishigaki H, Okamatsu M, Sakoda Y, Kida H, Ogasawara K: “Comparison of pathogenicities of H7 avian influenza viruses via intranasal and conjunctival inoculation in cynomolgus macaques”, Virology, 493, 31-8 (2016) i)
  6. Hiono T,Matsuno K, Tuchiya K, Lin Z, Okamatsu M, Sakoda Y: “Complete Genome Sequence of the Avian Paramyxovirus Serotype 5 Strain APMV-5/budgerigar/Japan/TI/75”, Genome Announc, 4(5), e01005-16 (2016) i) ii)
  7. Mitake H, Fujii Y, Nagai M, Ito N, Okadera K, Okada K, Nakagawa K, Kishimoto M, Mizutani T, Okazaki K, Sakoda Y, Takada A, Sugiyama M: “Isolation of a sp. nov. Ljungan virus from wild birds in Japan”, J Gen Virol, 97(8), 1818-22 (2016) i)
  8. Yamaguchi T, Yokoyama K, Nakajima C,Suzuki Y: “DC-159a Shows Inhibitory Activity against DNA Gyrases of Mycobacterium leprae”, PLoS Negl Trop Dis,10(9), e0005013(2016) i)
  9. Matsuba T, Siddiqi UR, Hattori T, Nakajima C, Fujii J, Suzuki Y: “Antigenic characterization of dimorphic surface protein in Mycobacterium tuberculosis”, FEMS Microbiol Lett, 363(10), fnw082 (2016) i)
  10. Seyama T, Hirayasu H, Yoshida G, Ohnuma A, Qiu, Nakajima C, Kasai K, Suzuki Y: “The effects of administering lactic acid bacteria sealed in a capsule on the intestinal bacterial flora of cattle.” Jpn J Vet Res, 64(3): 197-203 (2016) i)
  11. Fukui D, Nakamura M, Yamaguchi T, Takenaka M, Murakami M, Yanai T, Fukushi H, Yanagida K, Bando G, Matsuno K, Nagano M, Tsubota T: “An epizootic of emerging novel avian pox in carrion crows (Corvus corone) and large-billed crows (Corvus macrorhynchos) in Japan”, J Wildl Dis, 52(2), 230-41(2016) i) ii)
  12. Yamagishi J, Sato Y, Shinozaki N, Ye B, Tsuboi A, Nagasaki M, Yamashita R: “Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes”, PLoS One, 11(4), e0154389 (2016) i)
  13. Matsubayashi M, Kawahara F, Hatta T, Yamagishi J, Miyoshi T, Anisuzzaman, Sasai K, Isobe T, Kita K, Tsuji N: “Transcriptional profiles of virulent and precocious strains of Eimeria tenella at sporozoite stage; novel biological insight into attenuated asexual development”, Infect Genet Evol, pii, S1567-1348 (16) 30052-1 (2016) i)
  14. Hiono T, Okamatsu M, Yamamoto N, Ogasawara K, Endo M, Kuribayashi S, Shichinohe S, Motohashi Y, Chu DH, Suzuki M, Ichikawa T, Nishi T, Abe Y, Matsuno K, Tanaka K, Tanigawa T, Kida H, Sakoda Y : “Experimental infection of highly and low pathogenic avian influenza viruses to chickens, ducks, tree sparrows, jungle crows, and black rats for the evaluation of their roles in virus transmission”, Vet Microbiol, 182, 108-15 (201